Issue:
Lets Encrypt stopped working in Ubuntu 18 w/in ISPConfig 3 after patching to/past 3.1.3.
Solution:
Remove letsencrypt and replace with certbot
$ sudo apt update
$ sudo apt install software-properties-common
$ sudo add-apt-repository ppa:certbot/certbot
$ sudo apt update
$ sudo apt upgrade -y
$ sudo apt remove letsencrypt -y
$ sudo apt install python-certbot-apache -y
Afterwards, we unchecked both of the two checkboxes for Let's Encrypt and SSL in the web site page w/in the ISPConfig admin site, and then after the top pending updates notification (red circles) cleared, we re-selected both and waited for the those pending updates to process. Site SSL works.
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